More datasets including data, R script and output are available in MSstats material github.

Workflow Name Description Acquisition Type Data Processing Dataset R script PMID
MSstats MSstatsBioData R experiment package various types various tools RData check help file DOI:10.18129/B9.bioc.MSstatsBioData
MSstats ABRF iPRG 2015 study Description, Spike-in proteins Label-free LC-MS Skyline .zip R script, annotation 27990823
MSstats Controlled spike-in experiment Description Label-free LC-MS SuperHirn .csv R script 17726677
MSstats Controlled spike-in experiment Description SRM with labeled references MultiQuant .csv R script 22190732
MSstats Case-control investigation of ovarian cancer Description SRM with labeled references MultiQuant .csv R script 22190732
MSstats Time course investigation of S.cerevisiae Description SRM with labeled references MultiQuant .csv R script 19664813
MSstats CPTAC Description SRM with labeled references Skyline .csv R script 19561596
LOB/LOD Assay data Description SRM with labeled references Skyline .zip 26451657
MSstatsQC CPTAC Study 9.1 System suitability testing results SRM Skyline .csv Shiny app + R script 25693799
MSstatsQC QCloud QC dataset Results for BSA QC samples DDA QCloud .csv Shiny app + R script
MSstatsQC QCloud QC dataset Results for BSA QC samples SRM QCloud .csv Shiny app + R script
MSstatsQC QuiC iRT dataset Results for spike-in iRT peptides DIA QuiC .csv Shiny app + R script 25724911