MSstats is an open-source R package for statistical relative quantification of proteins and peptides in global, targeted, and data-independent proteomics. It provides workflows for

• detecting differentially abundant proteins for MS experiments with chromatography-based quantification, with complex designs,
• characterizing MS assays in terms of limit of blank and limit of detection (LOB/LOD),
• longitudinal monitoring of quality control and system suitability testing (SST).

Contributor Code of Conduct

As contributors and maintainers of MSstats project, we pledge to follow the Carpentry Code of Conduct.

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News

• MSstatsShiny UI v0.1.0 is now available (source code on github)
• MSstatsTMT v2.2.7 is available on Bioconductor 3.14.
• MSstats v4.2.0 is available on Bioconductor 3.14.
• MSstatsPTM v1.4.2 is available on Bioconductor 3.14.
• MSstatsLiP v1.0.0 is available on Bioconductor 3.14.
• The most recent development versions of all MSstats packages are available in github.