MSstats is an open-source R package for statistical relative quantification of proteins and peptides in global, targeted, and data-independent proteomics. It provides workflows for

  • Detecting differentially abundant proteins for MS experiments with chromatography-based quantification, with complex designs
  • Curve fitting for dose response curves, protein turnover, and thermal proteome profiling
  • Differential analysis of post-translational modifications (PTMs)
  • Differential analysis for tandem mass tag (TMT) experiments
  • Differential analysis for metabolomics

See the full family of tools on our extensions page.

⭐ Learn MSstats Hands-On at the May Institute

Every spring, the MSstats team teaches an intensive, hands-on MSstats Workshop at the May Institute, hosted at Northeastern University in Boston, MA. It’s the best way to learn directly from the developers — see our upcoming events for dates.

Can’t make it in person? Past lectures, tutorials, and case studies are freely available on our May Institute YouTube channel. Subscribe to catch new content as it’s posted!

 

Contributor Code of Conduct

As contributors and maintainers of MSstats project, we pledge to follow the Carpentry Code of Conduct.

Instances of abusive, harassing, or other unacceptable behavior may be reported by following our reporting guidelines.

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